Conservation genetics


 * For molecular conservation in genetics see: conservation (genetics). For the scientific journal Conservation Genetics, see Conservation Genetics (journal).

Conservation genetics is a science that aims to apply genetic methods to the maintenance, loss, and restoration of biodiversity. Researchers involved in conservation genetics come from a variety of fields including population genetics, molecular ecology and biology, evolutionary biology, and systematics. Genetics is one of three levels at which to conserve biodiveristy, the other two being species and ecosystem diveristy (3). In a more general sense, conservation of genetic variability is important to the overall health of populations because decreased genetic variablity leads to extinctions (1). In a specific sense, molecular techniques utilize individuals’ genetics to assess a population and then take adequate steps to fix or reverse the factors that lead to extinction, or reduced biodiversity.

Some factors that could lead to extinction and risk of extinction (2):

 * 1) inbreeding and inbreeding depression which reduces the fitness of populations. (1)
 * 2) The accumulation of deleterious mutations
 * 3) The loss of genetic vatiation, or heterozygosity, which decreases a species’ ability to evolve to deal with change in the environment (2).
 * 4) adapting to conditions in captivity
 * 5) outbreeding depression
 * 6) fragmented populations
 * 7) taxonomic uncertainties, which can lead to a reprioritization of conservation efforts (4)
 * 8) genetic drift as the main evolutionary process, instead of natural selection
 * 9) management units within species
 * 10) use of molecualar techniques, such as allozymes as molecular markers, to analyze species in depth

Techniques:
Specific genetic techniques are used to asses the genetics of a species regarding specific conservation issues as well as general population structure (4). This analysis can be done in two ways, with current DNA of individuals or historic DNA (5).

Techniques using current DNA include mitochondrial DNA, chloroplast DNA, minisatellite and microsatellite markers, Random Amplification of Polymorphic DNA, alloenzymes, Major Histocompatibility Complex, and gel electrophoresis. These techniques can provide information on long-term conservation of genetic diversity and expound demographic and ecological matters such as taxonomy(4).

Techniques using historic DNA include looking at preserved remains found in museums and caves (5). Evidence found in caves provides a longer perspective and does not disturb the animals(5). Historical perspectives are important because understanding how species reacted to changes in conditions in the past is a key to understanding reactions of similar species in the future (5).

Another technique that relies on specific genetics of an individual is non invasive monitoring, which uses extracted DNA from organic material an individual leaves behind, such as a feather (5). This too avoids disrupting the animals and can provide information about the sex, movement, kinship and diet of an individual (5).

Other more general techniques can be used to correct genetic factors that lead to extinction and risk of extinction. For example, when minimizing inbreeding and increasing genetic variation multiple steps can be taken. Increasing heterozygosity through immigration, increasing the generational interval through cryopreservation or breeding from older animals, and increasing the effective population size through equalization of family size all helps minimize inbreeding and its effects (1). Deleterious alleles arise through mutation, however certain recessive ones can become more prevalent due to inbreeding (1). Deleterious mutations that arise from inbreeding can be removed by purging, or natural selection (1). Populations raised in captivity with the intent of being reintroduced in the wild suffer from adaptations to captivity (6). Inbreeding depression, loss of genetic diversity, and genetic adaptation to captivity are disadvantageous in the wild, and many of these issues can be dealt with through the aforementioned techniques aimed at increasing heterozygosity. In addition creating a captive environment that closely resembles the wild and fragmenting the populations so there is less response to selection also help reduce adaptation to captivity(6).

Solutions to minimize the factors that lead to extinction and risk of extinction often overlap because the factors themselves overlap. For example, deleterious mutations are added to populations through mutation, however the deleterious mutations conservation biologists are concerned with are ones that are brought about by inbreeding, because those are the ones that can be taken care of by reducing inbreeding. Here the techniques to reduce inbreeding also help decrease the accumulation of deleterious mutations.

Applications:
These techniques have wide ranging applications. One application of these specific molecular techniques is in defining species and sup-species of salmonids (4). Hybridization is an especially important issue in salmonids and this has wide ranging conservation, political, social and economic implications. In Cutthroat Trout mtDNA and alloenzyme analysis, hybridization between native and non-native species was shown to be one of the major factors contributing to the decline in their populations. This led to efforts to remove some hybridized populations so native populations could breed more readily. Cases like these impact everything from the economy of local fishermen to larger companies, such as timber. Specific molecular techniques led to a closer analysis of taxonomic relationships, which is one factor that can lead to extinctions if unclear.

Implications
New technology in conservation genetics has many implications for the future of conservation biology. At the molecular level new technologies are being advanced, such as minisatellites and MHC (4). These molecular techniques have wider effects from clarifying taxonomic relationships, as in the previous example, to determining the best individuals to reintroduce to a population for recovery by determining kinship. These effects then have consequences that reach even further. Conservation of species has implications for humans in the economic, social, and political realms (4). In the biological realm increased genotypic diversity has been shown to help ecosystem recovery, as seen in a community of grasses which was able to resist disturbance to grazing geese through greater genotypic diversity (3). Because species diversity increases ecosystem function, increasing biodiversity through new conservation genetic techniques has wider reaching effects than before.

A short list of studies a conservation geneticist may research include:


 * 1) Phylogenetic classification of species, subspecies, geographic races, and populations, and measures of phylogenetic diversity and uniqueness.
 * 2) Identifying hybrid species, hybridization in natural populations, and assessing the history and extent of introgression between species.
 * 3) Population genetic structure of natural and managed populations, including identification of Evolutionary Significant Units (ESUs) and management units for conservation.
 * 4) Assessing genetic variation within a species or population, including small or endangered populations, and estimates such as effective population size (Ne).
 * 5) Measuring the impact of inbreeding and outbreeding depression, and the relationship between heterozygosity and measures of fitness (see Fisher's fundamental theorem of natural selection).
 * 6) Evidence of disrupted mate choice and reproductive strategy in disturbed populations.
 * 7) Forensic applications, especially for the control of trade in endangered species.
 * 8) Practical methods for monitoring and maximizing genetic diversity during captive breeding programs and re-introduction schemes, including mathematical models and case studies.
 * 9) Conservation issues related to the introduction of genetically modified organisms.
 * 10) The interaction between environmental contaminants and the biology and health of an organism, including changes in mutation rates and adaptation to local changes in the environment (e.g. industrial melanism).
 * 11) New techniques for noninvasive genotyping.